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1

A discipline of dynamic programming over sequence data

Robert Giegerich, Carsten Meyer, Peter Steffen

Journal:

Science of Computer Programming

Year:

2004

Language:

english

File:

PDF, 486 KB

english, 2004

2

Fibonacci-Cayley Numbers and Repetition Patterns in Genomic DNA

Andreas Dress, Robert Giegerich, Stefan Grünewald, Holger Wagner

Journal:

Annals of Combinatorics

Year:

2003

Language:

english

File:

PDF, 218 KB

english, 2003

3

Counter-one-pass features in one-pass compilation: A formalization using attribute grammars

Robert Giegerich, Reinhard Wilhelm

Journal:

Information Processing Letters

Year:

1978

Language:

english

File:

PDF, 869 KB

english, 1978

4

Yield grammar analysis and product optimization in a domain-specific language for dynamic programming

Sauthoff, Georg, Giegerich, Robert

Journal:

Science of Computer Programming

Year:

2014

Language:

english

File:

PDF, 491 KB

english, 2014

5

Forest alignment with affine gaps and anchors, applied in RNA structure comparison

Schirmer, Stefanie, Giegerich, Robert

Journal:

Theoretical Computer Science

Year:

2013

Language:

english

File:

PDF, 1.09 MB

english, 2013

6

ALIGNMENT OF MINISATELLITE MAPS BASED ON RUN-LENGTH ENCODING SCHEME

ABOUELHODA, MOHAMED I., GIEGERICH, ROBERT, BEHZADI, BEHSHAD, STEYAERT, JEAN-MARC

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2009

Language:

english

File:

PDF, 595 KB

english, 2009

7

[ACM Press the 1982 SIGPLAN symposium - Boston, Massachusetts, United States (1982.06.23-1982.06.25)] Proceedings of the 1982 SIGPLAN symposium on Compiler construction - SIGPLAN '82 - A truly generative semantics-directed compiler generator

Ganzinger, Harald, Giegerich, Robert, Möncke, Ulrich, Wilhelm, Reinhard

Year:

1982

Language:

english

File:

PDF, 897 KB

english, 1982

8

A Formal Framework for the Derivation of Machine-Specific Optimizers

Giegerich, Robert

Journal:

ACM Transactions on Programming Languages and Systems

Year:

1983

Language:

english

File:

PDF, 1.12 MB

english, 1983

9

A truly generative semantics-directed compiler generator

Ganzinger, Harald, Giegerich, Robert, Möncke, Ulrich, Wilhelm, Reinhard

Journal:

ACM SIGPLAN Notices

Year:

1982

Language:

english

File:

PDF, 897 KB

english, 1982

10

A comparison of imperative and purely functional suffix tree constructions

Robert Giegerich, Stefan Kurtz

Journal:

Science of Computer Programming

Year:

1995

Language:

english

File:

PDF, 1.93 MB

english, 1995

11

Analyzing ambiguity of context-free grammars

Claus Brabrand, Robert Giegerich, Anders Møller

Journal:

Science of Computer Programming

Year:

2010

Language:

english

File:

PDF, 1.61 MB

english, 2010

12

Complete probabilistic analysis of RNA shapes

Björn Voß, Robert Giegerich, Marc Rehmsmeier

Journal:

Year:

2006

Language:

english

File:

PDF, 1.02 MB

english, 2006

13

Composition and evaluation of attribute coupled grammars

Robert Giegerich

Journal:

Acta Informatica

Year:

1988

Language:

english

File:

PDF, 3.69 MB

english, 1988

14

Code selection by inversion of order-sorted derivors

Robert Giegerich

Journal:

Theoretical Computer Science

Year:

1990

Language:

english

File:

PDF, 4.44 MB

english, 1990

15

Surprises in approximating Levenshtein distances

Michael Baake, Uwe Grimm, Robert Giegerich

Journal:

Journal of Theoretical Biology

Year:

2006

Language:

english

File:

PDF, 400 KB

english, 2006

16

Table design in dynamic programming

Peter Steffen, Robert Giegerich

Journal:

Information and Computation

Year:

2006

Language:

english

File:

PDF, 512 KB

english, 2006

17

Fine-tuning structural RNA alignments in the twilight zone

Andreas Bremges, Stefanie Schirmer, Robert Giegerich

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 812 KB

english, 2010

18

Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction

Stefan Janssen, Christian Schudoma, Gerhard Steger, Robert Giegerich

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 595 KB

english, 2011

19

Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics

Jens Reeder, Robert Giegerich

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 345 KB

english, 2004

20

A comprehensive comparison of comparative RNA structure prediction approaches

Paul P Gardner, Robert Giegerich

Journal:

BMC Bioinformatics

Year:

2004

Language:

english

File:

PDF, 457 KB

english, 2004

21

Effective ambiguity checking in biosequence analysis

Janina Reeder, Peter Steffen, Robert Giegerich

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 307 KB

english, 2005

22

Versatile and declarative dynamic programming using pair algebras

Peter Steffen, Robert Giegerich

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 364 KB

english, 2005

23

Correction: versatile and declarative dynamic programming using pair algebras

Peter Steffen, Robert Giegerich

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 146 KB

english, 2006

24

Fast index based algorithms and software for matching position specific scoring matrices

Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.08 MB

english, 2006

25

XML schemas for common bioinformatic data types and their application in workflow systems

Philipp N Seibel, Jan Krüger, Sven Hartmeier, Knut Schwarzer, Kai Löwenthal, Henning Mersch, Thomas Dandekar, Robert Giegerich

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 495 KB

english, 2006

26

Shape based indexing for faster search of RNA family databases

Stefan Janssen, Jens Reeder, Robert Giegerich

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 652 KB

english, 2008

27

Efficient computation of absent words in genomic sequences

Julia Herold, Stefan Kurtz, Robert Giegerich

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 288 KB

english, 2008

28

GeneFisher-P: variations of GeneFisher as processes in Bio-jETI

Anna-Lena Lamprecht, Tiziana Margaria, Bernhard Steffen, Alexander Sczyrba, Sven Hartmeier, Robert Giegerich

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 2.75 MB

english, 2008

29

WAMI: a web server for the analysis of minisatellite maps

Mohamed Abouelhoda, Mohamed El-Kalioby, Robert Giegerich

Journal:

BMC Evolutionary Biology

Year:

2010

Language:

english

File:

PDF, 977 KB

english, 2010

30

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacteriumSinorhizobium meliloti

Jan-Philip Schlüter, Jan Reinkensmeier, Svenja Daschkey, Elena Evguenieva-Hackenberg, Stefan Janssen, Sebastian Jänicke, Jörg D Becker, Robert Giegerich, Anke Becker

Journal:

Year:

2010

Language:

english

File:

PDF, 3.39 MB

english, 2010

31

XenDB: Full length cDNA prediction and cross species mapping inXenopus laevis

Alexander Sczyrba, Michael Beckstette, Ali H Brivanlou, Robert Giegerich, Curtis R Altmann

Journal:

Year:

2005

Language:

english

File:

PDF, 1.47 MB

english, 2005

32

Best systematist practice transferred to molecular data

Georg Fuellen, J. Wolfgang Wägele, Robert Giegerich

Journal:

Organisms Diversity & Evolution

Year:

2001

Language:

english

File:

PDF, 1.65 MB

english, 2001

33

Beyond Mfold: Recent advances in RNA bioinformatics

Jens Reeder, Matthias Höchsmann, Marc Rehmsmeier, Björn Voss, Robert Giegerich

Journal:

Journal of Biotechnology

Year:

2006

Language:

english

File:

PDF, 630 KB

english, 2006

34

Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacteriumSinorhizobium meliloti1021

SchlÃ¼ter, Jan-Philip, Reinkensmeier, Jan, Barnett, Melanie J, Lang, Claus, Krol, Elizaveta, Giegerich, Robert, Long, Sharon R, Becker, Anke

Journal:

Year:

2013

Language:

english

File:

PDF, 3.95 MB

english, 2013

35

Personalized cloud-based bioinformatics services for research and education: use cases and theelasticHPCpackage

Mohamed El-Kalioby, Mohamed Abouelhoda, Jan Krüger, Robert Giegerich…

Journal:

BMC Bioinformatics

Year:

2012

Language:

english

File:

PDF, 761 KB

english, 2012

36

Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti

Torres-Quesada, Omar, Reinkensmeier, Jan, Schlüter, Jan-Philip, Robledo, Marta, Peregrina, Alexandra, Giegerich, Robert, Toro, Nicolás, Becker, Anke, Jiménez-Zurdo, Jose I

Journal:

Year:

2014

Language:

english

File:

PDF, 3.03 MB

english, 2014

37

Riboregulation in plant-associated α-proteobacteria

Becker, Anke, Overlöper, Aaron, Schlüter, Jan-Philip, Reinkensmeier, Jan, Robledo, Marta, Giegerich, Robert, Narberhaus, Franz, Evguenieva-Hackenberg, Elena

Journal:

Year:

2014

Language:

english

File:

PDF, 2.66 MB

english, 2014

38

Matching and Significance Evaluation of Combined Sequence-Structure Motifs in RNA

Meyer, Carsten, Giegerich, Robert

Journal:

Zeitschrift für Physikalische Chemie

Year:

2002

Language:

english

File:

PDF, 212 KB

english, 2002

39

Thermodynamic matchers for the construction of the cuckoo RNA family

Reinkensmeier, Jan, Giegerich, Robert

Journal:

Year:

2015

Language:

english

File:

PDF, 664 KB

english, 2015

40

Sequenzanalyse mit verteilten Ressourcen: Ein WWW-basierter Kurs

Büschking, Christian, Giegerich, Robert

Journal:

it - Information Technology

Year:

1996

Language:

german

File:

PDF, 2.81 MB

german, 1996

41

[ACM Press the Eleventh Workshop - Saarbrucken, Germany (2011.03.26-2011.03.27)] Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications - LDTA '11 - Yield grammar analysis in the Bellman's GAP compiler

Giegerich, Robert, Sauthoff, Georg

Year:

2011

Language:

english

File:

PDF, 289 KB

english, 2011

42

[ACM Press the 13th international ACM SIGPLAN symposium - Odense, Denmark (2011.07.20-2011.07.22)] Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming - PPDP '11 - Bellman's GAP

Sauthoff, Georg, Janssen, Stefan, Giegerich, Robert

Year:

2011

Language:

english

File:

PDF, 687 KB

english, 2011

43

[ACM Press the 9th ACM SIGPLAN-SIGACT symposium - Albuquerque, Mexico (1982.01.25-1982.01.27)] Proceedings of the 9th ACM SIGPLAN-SIGACT symposium on Principles of programming languages - POPL '82 - Automatic generation of machine specific code optimizers

Giegerich, Robert

Year:

1982

Language:

english

File:

PDF, 449 KB

english, 1982

44

[ACM Press the 2006 ACM symposium - Dijon, France (2006.04.23-2006.04.27)] Proceedings of the 2006 ACM symposium on Applied computing - SAC '06 - Challenges in the compilation of a domain specific language for dynamic programming

Giegerich, Robert, Steffen, Peter

Year:

2006

Language:

english

File:

PDF, 174 KB

english, 2006

45

[ACM Press the 5th international conference - Portland, Oregon, USA (2006.10.22-2006.10.26)] Proceedings of the 5th international conference on Generative programming and component engineering - GPCE '06 - A graphical programming system for molecular motif search

Reeder, Janina, Giegerich, Robert

Year:

2006

Language:

english

File:

PDF, 1.33 MB

english, 2006

46

Ambivalent covariance models

Janssen, Stefan, Giegerich, Robert

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 1.90 MB

english, 2015

47

Calculating PSSM probabilities with lazy dynamic programming

MALDE, KETIL, GIEGERICH, ROBERT

Journal:

Journal of Functional Programming

Year:

2005

Language:

english

File:

PDF, 83 KB

english, 2005

48

Pareto optimization in algebraic dynamic programming

Saule, Cédric, Giegerich, Robert

Journal:

Algorithms for Molecular Biology

Year:

2015

Language:

english

File:

PDF, 2.16 MB

english, 2015

49

The BRaliBase dent—a tale of benchmark design and interpretation

Löwes, Benedikt, Chauve, Cedric, Ponty, Yann, Giegerich, Robert

Journal:

Briefings in Bioinformatics

Year:

2016

Language:

english

File:

PDF, 438 KB

english, 2016

50

Improving Efficacy of Inhaled Technosphere Insulin (Afrezza) by Postmeal Dosing: In-silico Clinical Trial with the University of Virginia/Padova Type 1 Diabetes Simulator

Visentin, Roberto, Giegerich, Clemens, Jäger, Robert, Dahmen, Raphael, Boss, Anders, Grant, Marshall, Dalla Man, Chiara, Cobelli, Claudio, Klabunde, Thomas

Journal:

Diabetes Technology & Therapeutics

Year:

2016

Language:

english

File:

PDF, 1.36 MB

english, 2016